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data dwelling
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data dwelling
17 followers · 12 following

Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx2

Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx2

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biostochastics/README.md

What I Care About

Measurement.

Reproducibility.

Integration.

What's Here

Most of my work lives in private repositories (client work, pre-publication research). I'm working toward open-sourcing more of the general-purpose tooling.

Stack

R · Python · SQL · Docker · AWS/GCP · Snakemake · targets · Shiny · Quarto · Typst

Platforms: Olink PEA · SomaScan · Metabolon · RNA-Seq (bulk/scRNA) · WGS/WES· UHPLC-LC/MS

Elsewhere

🔬 biostochastics.com — consulting practice (biomarker validation, trial design, translational strategy)

📄 kornilov.bio — full background, publications, trajectory

🎓 Google Scholar — 65+ publications

📧 sergey@biostochastics.com

Pinned Loading

  1. extrinsic-frailty-heritability extrinsic-frailty-heritability Public

    Simulation pipeline: omitted extrinsic frailty inflates intrinsic heritability in calibrate-then-extrapolate mortality models

    R

  2. DoseFinder DoseFinder Public

    Simple allometric scaling calculator for pharmacological dose finding

    TypeScript

  3. CodeConCat CodeConCat Public

    A simple CLI tool that parses a local or Github repo and concats the annotated code into a separate file and or buffer.

    Python 2

  4. qiprng qiprng Public

    High-precision, configurable pseudo-random number generator based on quadratic irrational numbers with optional ChaCha20 mixing in R

    R

  5. clawbio_bench clawbio_bench Public

    Standalone Python audit suite that evaluates the agentic bioinformatics tools suite ClawBio for safety, security, and correctness.

    Python 3

  6. APMODE APMODE Public

    APMODE is a governed semi-automated population PK model discovery engine for reproducible A.I.-enabled workflows

    Python